Biostars Software Description

To complement this course, we have created a Biostars module on Biowulf. The following programs have been included in that module:

Apps/Dependencies:
bbtools
bcftools
bedtools
bio
bioawk
blastn
bowtie2
bwa
cd-hit
csvkit
csvtk
cutadapt
datamash
efetch
emboss
entrez-direct
fastqc
featureCounts
freebayes
gffread
hisat2
kallisto
mafft
minimap2
multiqc
parallel
picard
python
R/Rscript
readseq
salmon
samtools
seqkit
seqtk
snpEff
sra-tools
STAR
subread
trimmomatic
ucsc-bedgraphtobigwig
wget

R packages:
biomaRt
DESeq2
edgeR
GenomeInfoDb
ggplot2
gplots
pheatmap
RColorBrewer
tidyverse
tximport