Coronavirus copy

This page uses information directly from the Biostar Handbook by Istvan Albert (PSU).

Activate the bioinformatics environment and install some software as directed.

conda activate bioinfo
conda update -y blast
conda install -y cd-hit
pip install pyyaml
pip install --upgrade BiostarHandbook

Go to your Biostar Class directory and create a new directory named "virus".

cd biostar_class
mkdir virus
cd virus

Now we're going to download Coronavirus sequence data from the Biostar Handbook website.

curl -O http://data.biostarhandbook.com/books/corona/data/corona-virus-project.tar.gz

and we need to decompress the data using "tar".

tar zxvf corona-virus-project.tar.gz

This creates a new directory called "corona". Go to the "corona" directory.

cd corona