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Bioinformatics for Beginners, January 2025
Lesson 6: Introduction to RNA sequencing
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Bioinformatics for Beginners, January 2025
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Module 1 - Unix/Biowulf
Module 1 - Unix/Biowulf
Lesson 1: What is Biowulf?
Lesson 2: Navigating file systems with Unix
Lesson 3: Useful Unix
Lesson 4: Working on Biowulf
Lesson 5: Downloading data from the SRA
Module 2 - Introduction to RNA Sequencing
Module 2 - Introduction to RNA Sequencing
Lesson 6: Introduction to RNA sequencing
Lesson 7: Introduction to Next Generation Sequencing (NGS) Data and Quality Control
Lesson 8: Cleaning and Preparing Next Generation Sequencing (NGS) Data for Downstream Analysis
Lesson 9: Aligning Next Generation Sequencing (NGS) Data to Genome
Lesson 10: Quantifying Gene Expression from bulk RNA Sequencing Data
Lesson 11: Visualizing Genomic Data: Preparing Files
Lesson 12: Visualizing Genomic Data with the Integrative Genomics Viewer
Lesson 13: Differential Expression Analysis for Bulk RNA Sequencing: QC
Lesson 14: Differential Expression Analysis for Bulk RNA Sequencing: The Actual Analysis
Module 3 - Pathway Analysis
Module 3 - Pathway Analysis
Gene ontology and pathway analysis
Database for Annotation, Visualization and Integrated Discovery (DAVID) - An Overview
Pathway Analysis with Reactome
Help Sessions
Help Sessions
Lesson 2 Practice
Lesson 3 Practice
Lesson 4 Practice
Lesson 5 Practice
Unix Review Practice Session
Lesson 7 Practice
Lesson 8 Practice
Lesson 9 Practice
Lesson 10 Practice
Lesson 11 Practice
Lesson 12 Practice
Lesson 13 Practice
Lesson 14 Practice
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Lesson 6: Introduction to RNA Sequencing