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BTEP Coding Club
Accessing data from and Submitting data to the Gene Expression Omnibus (GEO)
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BTEP Coding Club
Welcome
2023
2023
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CC2023
Index
VLOOKUP in excel and the R programming equivalent
Documenting analysis with Jupyter Lab
Documenting analysis with Jupyter Lab
Tips for jupyter lab
Jupyter lab coding club examples
Functional Enrichment Analysis with clusterProfiler
Interactive and Batch Jobs on Biowulf
A Beginner's Guide to Troubleshooting R Code
ComplexHeatmap and Enhanced Volcano
Differential Alternative Splicing Analysis with rMATS
Accessing data from and Submitting data to the Gene Expression Omnibus (GEO)
Visualizing multi-dimensional omics data with circular plots in R package OmicCircos
Creating R / Python templates for the NIH Integrated Data Analysis Platform (NIDAP)
2024
2024
CC2024
CC2024
Index
Documenting Your Data Analysis with Quarto
An overview for versioning of code using GitHub
An Introduction to DAVID for Functional Enrichment Analysis
Version control using Git
Accessing and Downloading TCGA Data
Getting Started with Partek Flow at NIH
GEO Analysis Tools: New and Improved
Data Visualization and Statistical Integration with ggpubr
Accessing data from and Submitting data to the Gene Expression Omnibus (GEO)