A	C	G	T	N	IUPAC	Other	GC	GC_stdev
0.2169	0.2857	0.2819	0.2156	0.0000	0.0000	0.0000	0.5675	0.0513

Main genome scaffold total:         	4632
Main genome contig total:           	4632
Main genome scaffold sequence total:	2.277 Mb
Main genome contig sequence total:  	2.277 Mb  	0.000% gap
Main genome scaffold N/L50:         	1082/555
Main genome contig N/L50:           	1082/555
Main genome scaffold N/L90:         	3626/252
Main genome contig N/L90:           	3626/252
Max scaffold length:                	8.06 Kbp
Max contig length:                  	8.06 Kbp
Number of scaffolds > 50 KB:        	0
% main genome in scaffolds > 50 KB: 	0.00%


Minimum 	Number        	Number        	Total         	Total         	Scaffold
Scaffold	of            	of            	Scaffold      	Contig        	Contig  
Length  	Scaffolds     	Contigs       	Length        	Length        	Coverage
--------	--------------	--------------	--------------	--------------	--------
    All 	         4,632	         4,632	     2,276,814	     2,276,814	 100.00%
    100 	         4,632	         4,632	     2,276,814	     2,276,814	 100.00%
    250 	         3,655	         3,655	     2,057,975	     2,057,975	 100.00%
    500 	         1,271	         1,271	     1,240,469	     1,240,469	 100.00%
  1 Kbp 	           364	           364	       624,078	       624,078	 100.00%
2.5 Kbp 	            39	            39	       146,922	       146,922	 100.00%
  5 Kbp 	             5	             5	        32,817	        32,817	 100.00%


TEDreads mapping stats:
98582 reads; of these:
  98582 (100.00%) were paired; of these:
    25488 (25.85%) aligned concordantly 0 times
    52812 (53.57%) aligned concordantly exactly 1 time
    20282 (20.57%) aligned concordantly >1 times
    ----
    25488 pairs aligned concordantly 0 times; of these:
      1824 (7.16%) aligned discordantly 1 time
    ----
    23664 pairs aligned 0 times concordantly or discordantly; of these:
      47328 mates make up the pairs; of these:
        45446 (96.02%) aligned 0 times
        1430 (3.02%) aligned exactly 1 time
        452 (0.96%) aligned >1 times
76.95% overall alignment rate

Read alignment de-replication stats:
COMMAND: samtools markdup -r -s -f /outputs/asmbMTX/SRR12904821_asmb/SRR12904821_markdup.txt -@ 16 -T /outputs/tmpSRR12904821_markdup /outputs/asmbMTX/SRR12904821_asmb/SRR12904821_fixsrtd.bam /outputs/asmbMTX/SRR12904821_asmb/SRR12904821_asmbFinal.bam
READ: 151718
WRITTEN: 124575
EXCLUDED: 0
EXAMINED: 151718
PAIRED: 150398
SINGLE: 1320
DUPLICATE PAIR: 27068
DUPLICATE SINGLE: 75
DUPLICATE PAIR OPTICAL: 0
DUPLICATE SINGLE OPTICAL: 0
DUPLICATE NON PRIMARY: 0
DUPLICATE NON PRIMARY OPTICAL: 0
DUPLICATE PRIMARY TOTAL: 27143
DUPLICATE TOTAL: 27143
ESTIMATED_LIBRARY_SIZE: 183013

