A	C	G	T	N	IUPAC	Other	GC	GC_stdev
0.2906	0.2115	0.2046	0.2934	0.0000	0.0000	0.0000	0.4160	0.0499

Main genome scaffold total:         	2844
Main genome contig total:           	2844
Main genome scaffold sequence total:	1.448 Mb
Main genome contig sequence total:  	1.448 Mb  	0.000% gap
Main genome scaffold N/L50:         	632/577
Main genome contig N/L50:           	632/577
Main genome scaffold N/L90:         	2212/252
Main genome contig N/L90:           	2212/252
Max scaffold length:                	10.397 Kbp
Max contig length:                  	10.397 Kbp
Number of scaffolds > 50 KB:        	0
% main genome in scaffolds > 50 KB: 	0.00%


Minimum 	Number        	Number        	Total         	Total         	Scaffold
Scaffold	of            	of            	Scaffold      	Contig        	Contig  
Length  	Scaffolds     	Contigs       	Length        	Length        	Coverage
--------	--------------	--------------	--------------	--------------	--------
    All 	         2,844	         2,844	     1,447,787	     1,447,787	 100.00%
    100 	         2,844	         2,844	     1,447,787	     1,447,787	 100.00%
    250 	         2,236	         2,236	     1,311,648	     1,311,648	 100.00%
    500 	           800	           800	       815,312	       815,312	 100.00%
  1 Kbp 	           235	           235	       439,444	       439,444	 100.00%
2.5 Kbp 	            34	            34	       150,849	       150,849	 100.00%
  5 Kbp 	             9	             9	        70,960	        70,960	 100.00%
 10 Kbp 	             1	             1	        10,397	        10,397	 100.00%


TEDreads mapping stats:
57124 reads; of these:
  57124 (100.00%) were paired; of these:
    15855 (27.76%) aligned concordantly 0 times
    35251 (61.71%) aligned concordantly exactly 1 time
    6018 (10.53%) aligned concordantly >1 times
    ----
    15855 pairs aligned concordantly 0 times; of these:
      1009 (6.36%) aligned discordantly 1 time
    ----
    14846 pairs aligned 0 times concordantly or discordantly; of these:
      29692 mates make up the pairs; of these:
        28852 (97.17%) aligned 0 times
        630 (2.12%) aligned exactly 1 time
        210 (0.71%) aligned >1 times
74.75% overall alignment rate

Read alignment de-replication stats:
COMMAND: samtools markdup -r -s -f /outputs/asmbMTX/SRR12904817_asmb/SRR12904817_markdup.txt -@ 16 -T /outputs/tmpSRR12904817_markdup /outputs/asmbMTX/SRR12904817_asmb/SRR12904817_fixsrtd.bam /outputs/asmbMTX/SRR12904817_asmb/SRR12904817_asmbFinal.bam
READ: 85396
WRITTEN: 83380
EXCLUDED: 0
EXAMINED: 85396
PAIRED: 84816
SINGLE: 580
DUPLICATE PAIR: 1994
DUPLICATE SINGLE: 22
DUPLICATE PAIR OPTICAL: 0
DUPLICATE SINGLE OPTICAL: 0
DUPLICATE NON PRIMARY: 0
DUPLICATE NON PRIMARY OPTICAL: 0
DUPLICATE PRIMARY TOTAL: 2016
DUPLICATE TOTAL: 2016
ESTIMATED_LIBRARY_SIZE: 887732

