A	C	G	T	N	IUPAC	Other	GC	GC_stdev
0.2391	0.2645	0.2594	0.2370	0.0000	0.0000	0.0000	0.5239	0.0836

Main genome scaffold total:         	4966
Main genome contig total:           	4966
Main genome scaffold sequence total:	2.907 Mb
Main genome contig sequence total:  	2.907 Mb  	0.000% gap
Main genome scaffold N/L50:         	964/714
Main genome contig N/L50:           	964/714
Main genome scaffold N/L90:         	3747/268
Main genome contig N/L90:           	3747/268
Max scaffold length:                	15.341 Kbp
Max contig length:                  	15.341 Kbp
Number of scaffolds > 50 KB:        	0
% main genome in scaffolds > 50 KB: 	0.00%


Minimum 	Number        	Number        	Total         	Total         	Scaffold
Scaffold	of            	of            	Scaffold      	Contig        	Contig  
Length  	Scaffolds     	Contigs       	Length        	Length        	Coverage
--------	--------------	--------------	--------------	--------------	--------
    All 	         4,966	         4,966	     2,906,776	     2,906,776	 100.00%
    100 	         4,966	         4,966	     2,906,776	     2,906,776	 100.00%
    250 	         4,085	         4,085	     2,708,805	     2,708,805	 100.00%
    500 	         1,663	         1,663	     1,870,614	     1,870,614	 100.00%
  1 Kbp 	           570	           570	     1,127,655	     1,127,655	 100.00%
2.5 Kbp 	           102	           102	       430,403	       430,403	 100.00%
  5 Kbp 	            20	            20	       163,805	       163,805	 100.00%
 10 Kbp 	             3	             3	        45,807	        45,807	 100.00%


TEDreads mapping stats:
187469 reads; of these:
  187469 (100.00%) were paired; of these:
    21001 (11.20%) aligned concordantly 0 times
    45334 (24.18%) aligned concordantly exactly 1 time
    121134 (64.62%) aligned concordantly >1 times
    ----
    21001 pairs aligned concordantly 0 times; of these:
      1449 (6.90%) aligned discordantly 1 time
    ----
    19552 pairs aligned 0 times concordantly or discordantly; of these:
      39104 mates make up the pairs; of these:
        30664 (78.42%) aligned 0 times
        1331 (3.40%) aligned exactly 1 time
        7109 (18.18%) aligned >1 times
91.82% overall alignment rate

Read alignment de-replication stats:
COMMAND: samtools markdup -r -s -f /outputs/asmbMTX/SRR12904818_asmb/SRR12904818_markdup.txt -@ 16 -T /outputs/tmpSRR12904818_markdup /outputs/asmbMTX/SRR12904818_asmb/SRR12904818_fixsrtd.bam /outputs/asmbMTX/SRR12904818_asmb/SRR12904818_asmbFinal.bam
READ: 344274
WRITTEN: 323645
EXCLUDED: 0
EXAMINED: 344274
PAIRED: 343142
SINGLE: 1132
DUPLICATE PAIR: 20562
DUPLICATE SINGLE: 67
DUPLICATE PAIR OPTICAL: 0
DUPLICATE SINGLE OPTICAL: 0
DUPLICATE NON PRIMARY: 0
DUPLICATE NON PRIMARY OPTICAL: 0
DUPLICATE PRIMARY TOTAL: 20629
DUPLICATE TOTAL: 20629
ESTIMATED_LIBRARY_SIZE: 1373821

