A	C	G	T	N	IUPAC	Other	GC	GC_stdev
0.2197	0.2763	0.2760	0.2279	0.0000	0.0000	0.0000	0.5524	0.1551

Main genome scaffold total:         	6170
Main genome contig total:           	6170
Main genome scaffold sequence total:	1.596 Mb
Main genome contig sequence total:  	1.596 Mb  	0.000% gap
Main genome scaffold N/L50:         	2848/253
Main genome contig N/L50:           	2848/253
Main genome scaffold N/L90:         	5453/224
Main genome contig N/L90:           	5453/224
Max scaffold length:                	1.104 Kbp
Max contig length:                  	1.104 Kbp
Number of scaffolds > 50 KB:        	0
% main genome in scaffolds > 50 KB: 	0.00%


Minimum 	Number        	Number        	Total         	Total         	Scaffold
Scaffold	of            	of            	Scaffold      	Contig        	Contig  
Length  	Scaffolds     	Contigs       	Length        	Length        	Coverage
--------	--------------	--------------	--------------	--------------	--------
    All 	         6,170	         6,170	     1,595,786	     1,595,786	 100.00%
     50 	         6,170	         6,170	     1,595,786	     1,595,786	 100.00%
    100 	         6,168	         6,168	     1,595,632	     1,595,632	 100.00%
    250 	         3,202	         3,202	       906,117	       906,117	 100.00%
    500 	            24	            24	        13,993	        13,993	 100.00%
  1 Kbp 	             1	             1	         1,104	         1,104	 100.00%


TEDreads mapping stats:
24812 reads; of these:
  24812 (100.00%) were paired; of these:
    17663 (71.19%) aligned concordantly 0 times
    7021 (28.30%) aligned concordantly exactly 1 time
    128 (0.52%) aligned concordantly >1 times
    ----
    17663 pairs aligned concordantly 0 times; of these:
      144 (0.82%) aligned discordantly 1 time
    ----
    17519 pairs aligned 0 times concordantly or discordantly; of these:
      35038 mates make up the pairs; of these:
        33530 (95.70%) aligned 0 times
        1464 (4.18%) aligned exactly 1 time
        44 (0.13%) aligned >1 times
32.43% overall alignment rate

Read alignment de-replication stats:
COMMAND: samtools markdup -r -s -f /outputs/asmbMetaSpades/S1_GItract_HiSeq_cami_asmb/S1_GItract_HiSeq_cami_tmp_markdup.txt -@ 16 -T /outputs/tmpS1_GItract_HiSeq_cami_markdup /outputs/asmbMetaSpades/S1_GItract_HiSeq_cami_asmb/S1_GItract_HiSeq_cami_fixmate_sorted.bam /outputs/asmbMetaSpades/S1_GItract_HiSeq_cami_asmb/S1_GItract_HiSeq_cami_assembly.bam
READ: 16094
WRITTEN: 16091
EXCLUDED: 0
EXAMINED: 16094
PAIRED: 14608
SINGLE: 1486
DUPLICATE PAIR: 0
DUPLICATE SINGLE: 3
DUPLICATE PAIR OPTICAL: 0
DUPLICATE SINGLE OPTICAL: 0
DUPLICATE NON PRIMARY: 0
DUPLICATE NON PRIMARY OPTICAL: 0
DUPLICATE PRIMARY TOTAL: 3
DUPLICATE TOTAL: 3
ESTIMATED_LIBRARY_SIZE: 0

