A	C	G	T	N	IUPAC	Other	GC	GC_stdev
0.2999	0.1954	0.1962	0.3085	0.0000	0.0000	0.0000	0.3916	0.1308

Main genome scaffold total:         	6820
Main genome contig total:           	6820
Main genome scaffold sequence total:	1.890 Mb
Main genome contig sequence total:  	1.890 Mb  	0.000% gap
Main genome scaffold N/L50:         	2859/261
Main genome contig N/L50:           	2859/261
Main genome scaffold N/L90:         	5981/225
Main genome contig N/L90:           	5981/225
Max scaffold length:                	925
Max contig length:                  	925
Number of scaffolds > 50 KB:        	0
% main genome in scaffolds > 50 KB: 	0.00%


Minimum 	Number        	Number        	Total         	Total         	Scaffold
Scaffold	of            	of            	Scaffold      	Contig        	Contig  
Length  	Scaffolds     	Contigs       	Length        	Length        	Coverage
--------	--------------	--------------	--------------	--------------	--------
    All 	         6,820	         6,820	     1,889,724	     1,889,724	 100.00%
     50 	         6,820	         6,820	     1,889,724	     1,889,724	 100.00%
    100 	         6,819	         6,819	     1,889,654	     1,889,654	 100.00%
    250 	         3,940	         3,940	     1,223,221	     1,223,221	 100.00%
    500 	           145	           145	        84,058	        84,058	 100.00%


TEDreads mapping stats:
24822 reads; of these:
  24822 (100.00%) were paired; of these:
    15274 (61.53%) aligned concordantly 0 times
    9106 (36.69%) aligned concordantly exactly 1 time
    442 (1.78%) aligned concordantly >1 times
    ----
    15274 pairs aligned concordantly 0 times; of these:
      559 (3.66%) aligned discordantly 1 time
    ----
    14715 pairs aligned 0 times concordantly or discordantly; of these:
      29430 mates make up the pairs; of these:
        27042 (91.89%) aligned 0 times
        2262 (7.69%) aligned exactly 1 time
        126 (0.43%) aligned >1 times
45.53% overall alignment rate

Read alignment de-replication stats:
COMMAND: samtools markdup -r -s -f /outputs/asmbMetaSpades/S28_Skin_HiSeq_cami_asmb/S28_Skin_HiSeq_cami_tmp_markdup.txt -@ 16 -T /outputs/tmpS28_Skin_HiSeq_cami_markdup /outputs/asmbMetaSpades/S28_Skin_HiSeq_cami_asmb/S28_Skin_HiSeq_cami_fixmate_sorted.bam /outputs/asmbMetaSpades/S28_Skin_HiSeq_cami_asmb/S28_Skin_HiSeq_cami_assembly.bam
READ: 22602
WRITTEN: 22599
EXCLUDED: 0
EXAMINED: 22602
PAIRED: 20322
SINGLE: 2280
DUPLICATE PAIR: 0
DUPLICATE SINGLE: 3
DUPLICATE PAIR OPTICAL: 0
DUPLICATE SINGLE OPTICAL: 0
DUPLICATE NON PRIMARY: 0
DUPLICATE NON PRIMARY OPTICAL: 0
DUPLICATE PRIMARY TOTAL: 3
DUPLICATE TOTAL: 3
ESTIMATED_LIBRARY_SIZE: 0

