A	C	G	T	N	IUPAC	Other	GC	GC_stdev
0.2581	0.2363	0.2382	0.2675	0.0000	0.0000	0.0000	0.4744	0.1119

Main genome scaffold total:         	7010
Main genome contig total:           	7010
Main genome scaffold sequence total:	1.930 Mb
Main genome contig sequence total:  	1.930 Mb  	0.000% gap
Main genome scaffold N/L50:         	2959/261
Main genome contig N/L50:           	2959/261
Main genome scaffold N/L90:         	6152/225
Main genome contig N/L90:           	6152/225
Max scaffold length:                	737
Max contig length:                  	737
Number of scaffolds > 50 KB:        	0
% main genome in scaffolds > 50 KB: 	0.00%


Minimum 	Number        	Number        	Total         	Total         	Scaffold
Scaffold	of            	of            	Scaffold      	Contig        	Contig  
Length  	Scaffolds     	Contigs       	Length        	Length        	Coverage
--------	--------------	--------------	--------------	--------------	--------
    All 	         7,010	         7,010	     1,929,842	     1,929,842	 100.00%
     50 	         7,010	         7,010	     1,929,842	     1,929,842	 100.00%
    100 	         7,009	         7,009	     1,929,780	     1,929,780	 100.00%
    250 	         4,069	         4,069	     1,250,005	     1,250,005	 100.00%
    500 	           106	           106	        61,309	        61,309	 100.00%


TEDreads mapping stats:
24832 reads; of these:
  24832 (100.00%) were paired; of these:
    15371 (61.90%) aligned concordantly 0 times
    9065 (36.51%) aligned concordantly exactly 1 time
    396 (1.59%) aligned concordantly >1 times
    ----
    15371 pairs aligned concordantly 0 times; of these:
      467 (3.04%) aligned discordantly 1 time
    ----
    14904 pairs aligned 0 times concordantly or discordantly; of these:
      29808 mates make up the pairs; of these:
        27110 (90.95%) aligned 0 times
        2627 (8.81%) aligned exactly 1 time
        71 (0.24%) aligned >1 times
45.41% overall alignment rate

Read alignment de-replication stats:
COMMAND: samtools markdup -r -s -f /outputs/asmbMetaSpades/S6_Oral_HiSeq_cami_asmb/S6_Oral_HiSeq_cami_tmp_markdup.txt -@ 16 -T /outputs/tmpS6_Oral_HiSeq_cami_markdup /outputs/asmbMetaSpades/S6_Oral_HiSeq_cami_asmb/S6_Oral_HiSeq_cami_fixmate_sorted.bam /outputs/asmbMetaSpades/S6_Oral_HiSeq_cami_asmb/S6_Oral_HiSeq_cami_assembly.bam
READ: 22554
WRITTEN: 22552
EXCLUDED: 0
EXAMINED: 22554
PAIRED: 19920
SINGLE: 2634
DUPLICATE PAIR: 0
DUPLICATE SINGLE: 2
DUPLICATE PAIR OPTICAL: 0
DUPLICATE SINGLE OPTICAL: 0
DUPLICATE NON PRIMARY: 0
DUPLICATE NON PRIMARY OPTICAL: 0
DUPLICATE PRIMARY TOTAL: 2
DUPLICATE TOTAL: 2
ESTIMATED_LIBRARY_SIZE: 0

