A	C	G	T	N	IUPAC	Other	GC	GC_stdev
0.2892	0.2060	0.2063	0.2984	0.0000	0.0000	0.0000	0.4124	0.0738

Main genome scaffold total:         	6796
Main genome contig total:           	6796
Main genome scaffold sequence total:	1.856 Mb
Main genome contig sequence total:  	1.856 Mb  	0.000% gap
Main genome scaffold N/L50:         	2946/259
Main genome contig N/L50:           	2946/259
Main genome scaffold N/L90:         	5946/225
Main genome contig N/L90:           	5946/225
Max scaffold length:                	1.016 Kbp
Max contig length:                  	1.016 Kbp
Number of scaffolds > 50 KB:        	0
% main genome in scaffolds > 50 KB: 	0.00%


Minimum 	Number        	Number        	Total         	Total         	Scaffold
Scaffold	of            	of            	Scaffold      	Contig        	Contig  
Length  	Scaffolds     	Contigs       	Length        	Length        	Coverage
--------	--------------	--------------	--------------	--------------	--------
    All 	         6,796	         6,796	     1,855,648	     1,855,648	 100.00%
    100 	         6,796	         6,796	     1,855,648	     1,855,648	 100.00%
    250 	         3,848	         3,848	     1,172,931	     1,172,931	 100.00%
    500 	           111	           111	        66,695	        66,695	 100.00%
  1 Kbp 	             1	             1	         1,016	         1,016	 100.00%


TEDreads mapping stats:
24829 reads; of these:
  24829 (100.00%) were paired; of these:
    15801 (63.64%) aligned concordantly 0 times
    8650 (34.84%) aligned concordantly exactly 1 time
    378 (1.52%) aligned concordantly >1 times
    ----
    15801 pairs aligned concordantly 0 times; of these:
      380 (2.40%) aligned discordantly 1 time
    ----
    15421 pairs aligned 0 times concordantly or discordantly; of these:
      30842 mates make up the pairs; of these:
        28244 (91.58%) aligned 0 times
        2414 (7.83%) aligned exactly 1 time
        184 (0.60%) aligned >1 times
43.12% overall alignment rate

Read alignment de-replication stats:
COMMAND: samtools markdup -r -s -f /outputs/asmbMetaSpades/S9_Air_HiSeq_cami_asmb/S9_Air_HiSeq_cami_tmp_markdup.txt -@ 16 -T /outputs/tmpS9_Air_HiSeq_cami_markdup /outputs/asmbMetaSpades/S9_Air_HiSeq_cami_asmb/S9_Air_HiSeq_cami_fixmate_sorted.bam /outputs/asmbMetaSpades/S9_Air_HiSeq_cami_asmb/S9_Air_HiSeq_cami_assembly.bam
READ: 21414
WRITTEN: 21410
EXCLUDED: 0
EXAMINED: 21414
PAIRED: 18944
SINGLE: 2470
DUPLICATE PAIR: 0
DUPLICATE SINGLE: 4
DUPLICATE PAIR OPTICAL: 0
DUPLICATE SINGLE OPTICAL: 0
DUPLICATE NON PRIMARY: 0
DUPLICATE NON PRIMARY OPTICAL: 0
DUPLICATE PRIMARY TOTAL: 4
DUPLICATE TOTAL: 4
ESTIMATED_LIBRARY_SIZE: 0

