Generate BioJupies Notebook is a DNAnexus applet that generates a BioJupies Notebook. Given an expression table file and a sample metadata file, generate_biojupies_notebook BioJupies generates a Jupyter-style Notebook complete with embedded graphics. In BioJupies own word:
With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface.
Required Input Files
A Set of quant.sf Files – Select a set of files with naming convention sample_name_quant.sf. Where, you substitute sample_name with a unique sample name containing alpha-numeric characters and no spaces. You can obtain quant.sf files:
- Expression Counts Table
- Sample metadata file
- Expression HTML File –
For NCI Members
- Find out more about GAU’s DNAnexus Pilot Program.
- For NCI Members who want to use DNAnexus or develop you must get an account.