Additional Resources

1. BTEP scRNA-Seq FAQs
2. scRNA-Seq Training Modules Available on Github
3. Spatial Transcriptomics Training Modules Available on Github
4. Orchestrating Single Cell Analysis with Bioconductor
5. Orchestrating Spatial Transcriptomics Analysis with Bioconductor
6. Single Cell Best Practices
7. Learn scverse
8. 2023 / 2025 BTEP Single Cell Seminar Series
9. 2024 Getting Started with scRNA-seq Seminar Series
10. Analysis Guides from 10X Genomics
11. 10X Genomics Knowledge base Q&A

Contacts

Who can you contact with questions?

1. NCI CCR Single Cell and Spatial Core (SCSC)

   • provides single cell and spatial support to NCI-CCR Researchers.

2. NCI CCR Bioinformatics Training and Education Program (BTEP)

   • provides bioinformatics training support.
   • Contact BTEP via email at ncibtep@nih.gov.

3. Advanced Biomedical Computational Science (ABCS)

   • focuses on applications of bioinformatics, computational and data science, and artificial intelligence to support NCI researchers.
   • Submit a project request here.

4. CCR Collaborative Bioinformatics Resource (CCBR)

   • provides a mechanism for CCR researchers to obtain many different types of bioinformatics assistance to further their research goals.
   • Contact CCBR for questions related to CCBR Workflows & Training on NIDAP.
   • If you are a CCR researcher and you would like to request additional project consultation and analysis from CCBR, use this form.