Expression and Variant Data Analysis with CLC Genomics Workbench
To Know
About this Class
This three hour online training covers QIAGEN’s CLC Genomics Workbench enables researchers to analyze NGS data without the use of command line and is a powerful tool for determining differential expression. In this workshop students will explore the usage of CLC Genomics Workbench for taking raw NGS data and performing QC, processing, statistical analyses, and visualizations. The training will focus on the identifying differentially expressed genes from RNA-seq and how those results can be passed to Ingenuity Pathway Analysis (IPA) for biological interpretation.
By the end of this training, attendees will be able to:
- Import FASTQ files and metadata
- how to download references
- Map reads to a reference genome and generate gene and transcript counts and QC reports displaying % mapped reads, knee plots, etc.
- Generate visualizations of results, such as heatmaps, differential expression tables, PCA/PCOA plots, Venn diagrams and others
- Easily customize RNA-seq workflows
- Export publication-quality graphics, tables and report
- Send differential expression tables to QIAGEN Ingenuity Pathway Analysis directly from QIAGEN CLC Genomics Workbench to analyze and interpret relevant pathways
Notes on Technology
Registrants will receive an email with information and instructions to install CLC Genomics before the training. If you register the day before the training, you may not have time to download and properly install CLC Genomics. If you do not have the software installed, this training will be demo only.