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Bioinformatics Training and Education Program

An Introduction to Analysis of Next Generation Sequencing Data using the CLC Genomics Workbench and Genomics Server

An Introduction to Analysis of Next Generation Sequencing Data using the CLC Genomics Workbench and Genomics Server

 When: May. 7th, 2013 2:15 pm - 4:15 pm

This class has ended.
To Know
  • Registration: May. 7th, 2013-May. 7th, 2013
  • Where: Building 37, Room 4041/4107
  • Organized By: BTEP
  • Presented By: Robert Mervis, PhD (CLC bio.)

About this Class

 
This 2 hour seminar will be an interactive discussion and demonstration of the types of applications and work-flows that can be performed on deep sequencing data generated by the latest instruments from Illumina, Life Technologies (SOLiD and Ion Torrent), Roche/454 and others. Applications include the following:
 

  • Data import - Un-aligned reads (FASTQ, .sff etc.) and aligned reads (SAM/BAM)
  • Read mapping to reference sequence(s)
  • De novo assembly
  • Transcriptome assembly
  • Digital gene expression analysis by RNA Sequencing
  • Exome sequencing by target enrichment
  • Variant detection
  • ChIP Seq Analysis
  • Small RNA analysis
  • Curating reference sequences with annotations of interest
  • Working with Annotation Tracks
  • BLAST  - Find and compare genes, protein products and place contigs
  • Workflows- Visually Creating and Editing Analysis Pipelines

 
CLC bio software (Genomics Server and Genomics Workbench) is available to all researchers affiliated with CCR