BTEP: Single Cell RNA-Seq Analysis with Partek Flow
When: Dec. 11th, 2019 1:00 pm - 4:00 pm
This class has ended.
Video Archive
*Class recordings may take ~48 hours to become available.
To Know
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Where: FAES Room 2 – B1C209
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Organized By: BTEP
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Presented By: Xiaowen Wang (Partek)
- Files
About this Class
Hands On Training on Single Cell RNA-Seq Data Analysis in Partek Flow
Please bring your own computer for this hands-on training. If you need to borrow a computer please email ncibtep@nih.gov
Hands on training on the new data visualization tool in Partek Flow – Data Viewer, using a Single Cell RNA-Seq data set as an example. The newly implemented and released Data Viewer in Partek Flow provides more flexible and easy ways to integrate information collected from the data, which helps biologists discover biological meanings.
Agenda:
- Overview on the new Partek Flow Data Viewer
- Hand On Session on Single Cell RNA-Seq Analysis using the new Data Viewer
- Import count matrix
- Single cell QC
- Filter and Normalization
- Dimension reduction (PCA, tSNE, UMAP)
- Identify subpopulation with newly released Data Viewer
- Differential expression detection
- Visualizations (scatterplot, violin plot, volcano plot, box plot, histogram etc.)
- Biological interpretation
- Q/A
If you are unable to attend in person WebEx will be available:
| Meeting number (access code): 734 351 875 |
| Meeting password: 6JiNF8B@ |
| Wednesday, December 11, 2019 |
| 1:00 pm | (UTC-05:00) Eastern Time (US & Canada) | 3 hrs |
| Join by phone |
| Tap to call in from a mobile device (attendees only) |
| 1-650-479-3207 Call-in toll number (US/Canada) |
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| Join from a video system or application |
| Dial 734351875@cbiit.webex.com |
| You can also dial 173.243.2.68 and enter your meeting number. |
Files
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PartekFlowTrainingHandout_SingleCell_NewDataViewer.pdf: |
