BTEP: Single Cell RNA-Seq Analysis with Partek Flow
When: Dec. 11th, 2019 1:00 pm - 4:00 pm
To Know
Where:
FAES Room 2 – B1C209
Organizer:
BTEP
Presented By:
Xiaowen Wang (Partek)
Class Files:
About this Class
Hands On Training on Single Cell RNA-Seq Data Analysis in Partek Flow Please bring your own computer for this hands-on training. If you need to borrow a computer please email ncibtep@nih.gov Hands on training on the new data visualization tool in Partek Flow – Data Viewer, using a Single Cell RNA-Seq data set as an example. The newly implemented and released Data Viewer in Partek Flow provides more flexible and easy ways to integrate information collected from the data, which helps biologists discover biological meanings. Agenda:- Overview on the new Partek Flow Data Viewer
- Hand On Session on Single Cell RNA-Seq Analysis using the new Data Viewer
- Import count matrix
- Single cell QC
- Filter and Normalization
- Dimension reduction (PCA, tSNE, UMAP)
- Identify subpopulation with newly released Data Viewer
- Differential expression detection
- Visualizations (scatterplot, violin plot, volcano plot, box plot, histogram etc.)
- Biological interpretation
- Q/A
| Meeting number (access code): 734 351 875 |
| Meeting password: 6JiNF8B@ |
| Wednesday, December 11, 2019 |
| 1:00 pm | (UTC-05:00) Eastern Time (US & Canada) | 3 hrs |
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