Rahul Satija: (Azimuth) Annotation of Cell Types in Single Cell Analysis of Cancer

Single Cell Seminar Series

Rahul Satija: (Azimuth) Annotation of Cell Types in Single Cell Analysis of Cancer

 When: Apr. 6th, 2023 1:00 pm - 2:00 pm

This class has ended.

Event Recording

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Seminar Series Details:

Presented By:

Rahul Satija (NYU)

Where:

Online Webinar

Organized By:

BTEP

About Rahul Satija (NYU)

 

Associate Professor of Biology

Center for Genomics and Systems Biology
12 Waverly Place
Room 503
New York, NY 10003

About this Class

Azimuth is a web application that uses an annotated reference dataset to automate the processing, analysis, and interpretation of a new single-cell RNA-seq experiment. Azimuth leverages a 'reference-based mapping' pipeline that inputs a counts matrix of gene expression in single cells, and performs normalization, visualization, cell annotation, and differential expression (biomarker discovery). All results can be explored within the app, and easily downloaded for additional downstream analysis. - Satija Lab

The development of Azimuth is led by the New York Genome Center Mapping Component as part of the NIH Human Biomolecular Atlas Project (HuBMAP).

This webinar will be recorded and made available on the BTEP web site: https://bioinformatics.ccr.cancer.gov/btep/btep-video-archive-of-past-classes/ within 48 hours after the event ends.