Revealing Tumor-Promoting Signals in Breast Cancer Subtypes: A NIDAP Analysis of Single-Cell Data
To Know
Where:
Online Webinar
Organizer:
BTEP
Presented By:
Joshua Meyer (CCBR)
About this Class
Join us for a one-hour talk investigating tumor signatures in the BRCA dataset by utilizing the CCBR Single-Cell RNA-seq Workflow on NIDAP. This talk will take you through an analysis of a publicly available BRCA single-cell atlas (link) to identify changes in the tumor microenvironment across breast cancer subtypes.
By the end of this session, attendees will be able to:
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- Understand the structure and capabilities of the CCBR Single-Cell RNA-seq Workflow on NIDAP, including cell filtering, batch correction, annotation, and visualization (e.g. UMAP, t-SNE, violin plot, etc.).
- Access training resources and support for using this single-cell workflow, as well as additional NIDAP workflows (Bulk RNA-seq, Digital Spatial Profiling, and Visium) to analyze your own data
Who Should Attend? This session is open to all researchers interested in single-cell RNA-seq data analysis, including beginners and experienced users looking to explore NIDAP's capabilities.
Requirements: No prior experience with NIDAP is required. However, attendees are encouraged to familiarize themselves with the platform by accessing training resources or contacting CCBR Support for guidance.
Training Resources: Attendees will be introduced to key resources for further exploration:
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- Workbooks: Templates for both single-cell and bulk RNA-seq workflows.
- Training Videos: Step-by-step tutorials covering core concepts and processes.
- Support Contacts: Assistance for workflow implementation.
Technology Note: This talk will focus on providing an overview and does not require NIDAP access. For hands-on tutorials, consider attending our dedicated training sessions below: Sign Up for a NIDAP Hands-on Workshop
Contact for Assistance: For questions about the workflows or additional support, contact CCR Support at NCICCBRNIDAP@mail.nih.gov.