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CLC Genomics Workbench

The CLC Genomics Workbench is the client software for the CLC Genomics Server. Investigators can run many of the tasks on the workbench with an easy option to submit longer running tasks to run on the Genomics Server. The Genomics Server not only provides a scalable computing solution for computationally demanding tasks like genome mapping and RNA-seq analysis, but also manages access to filesystems and databases to support these bigger jobs.

Categories:

  •  Commercial
  •  Desktop
CLC Genomics Workbench The CLC Genomics Workbench is the client software for the CLC Genomics Server. Features for the Genomics Workbench are described below:
  • Analyzing and visualizing Next Generation Sequencing data, incorporates cutting-edge technology and algorithms, while also supporting and integrating with the rest of your typical NGS workflow.
  • Read mapping of Sanger, 454, Illumina Genome Analyzer and SOLiD sequencing data
  • De novo assembly of genomes of any size (only limited by RAM available)
  • Color space mapping
  • Advanced visualization, scrolling, and zooming tools
  • SNP detection using advanced quality filtering
  • Support for multiplexing with DNA barcoding
  • RNA-seq including support for paired data and transcript-level expressio
  • Small RNA analysis
  • Expression profiling by tags
  • EST library construction
  • Advanced visualization, scrolling, and zooming tools
  • Gene expression analysis
  • Chromatin Immuno-Precipitation sequencing (ChIP-seq) analysis
  • Peak finding and peak refinement
  • Graph and table of background distribution and false discovery rate
  • Peak table and annotations
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