BTEP: Microarray and Methylation Data Analysis in Partek Genomics Suite with Pathway
When: Aug. 28th, 2019 9:00 am - 11:00 am
To Know
Where:
Building 37, Room 4041/4107
Presented By:
Xiaowen Wang (Partek)
This class has ended.
Video Archive
*Class recordings may take ~48 hours to become available.
About this Class
Please bring your computer with Partek Genomics Suite to this hands-on workshop. You'll need to submit a request through “NCI at Your Service” to obtain the access to this software.
Partek will demonstrate both Microarray and Methylation Data Analysis in Partek Genomics Suite with Pathway
***Microarray Data Analysis in Partek Genomics Suite with Pathway***
Abstract: The class will start with an overview of Partek Genomics Suite with Pathway and followed by a hands-on tutorial session using a sample Gene Expression dataset. The hands-on session will help attendees gain expertise on the following topics: data import, QA/QC, exploratory data analysis, differential expression analysis, visualizations, and biological interpretation as well as other basic analysis in Partek Genomics Suite with Pathway.
- Data Import
- QA/QC
- Exploratory Data Analysis
- Differential Expression Analysis
- Visualization (PCA, hierarchical clustering, dot plot, chromosome view, volcano plot, etc.)
- Biological Interpretation
***Microarray Methylation Data Analysis in Partek Genomics Suite***
The class will use the Illumina 450K Methylation array data. The workflow can also be used on HumanMethylation27 (27K) and HumanMethylationEPIC (850K) BeadChips. Attendees will learn how to perform QA/QC, detect differential methylation, find genes overlapping CpG loci and biological interpretation in Partek Genomics Suite with Pathway.
- Import data from Illumina methylation array in .idat files
- Methylation array-specific normalization
- Perform QA/AC
- Detection of differentially methylated CpG loci
- Creating list of loci of interest
- Identifying methylation signatures
- Find overlapping genes
- Biological interpretation
- Visualization
- PCA
- Dot plot
- Hierarchical clustering
- Pathway
If you can not attend in person, WebEx will be provided.
| Meeting number (access code): 733 186 710 |
| Meeting password: JdyNKF@3 |
|
| Wednesday, August 28, 2019 |
| 8:30 am | (UTC-05:00) Eastern Time (US & Canada) | 2 hrs 30 mins |
| Join by phone |
| Tap to call in from a mobile device (attendees only) |
| 1-650-479-3207 Call-in toll number (US/Canada) |
|
| Join from a video system or application |
| Dial 733186710@cbiit.webex.com |
| You can also dial 173.243.2.68 and enter your meeting number. |
