Hands-on - Gene Expression using Microarrays with Partek Genomics Suite and Partek Pathway
When: Oct. 9th, 2012 2:00 pm - 5:00 pm
- Registration: Oct. 9th, 2012-Oct. 9th, 2012
- Where: In-Person
- Organized By: BTEP
About this Class
Learn the basics of microarray gene expression analysis using Partek Genomics Suite and Partek Pathway. As we walk though hands-on analysis of a cancer dataset, you will learn the principles of experimental design, batch correction, statistics, and how to extract biological meaning from the results using tools geneset analyses and pathways.
- Gene Expression Analysis with Affymetrix (cancer dataset)
- Good experimental design practices
- Import CEL files/normalization options
- Describing sample groups
- Batch correction
- Detecting differentially expressed genes/creating a gene list
- Hierarchical Clustering and other visualizations
- GO Analysis
- Pathway Enrichment
- GeneSet analysis (including Pathway ANOVA)
- Integration with microRNA
Course Materials: