About this Class

Learn the basics of microarray gene expression analysis using Partek Genomics Suite and Partek Pathway. As we walk though hands-on analysis of a cancer dataset, you will learn the principles of experimental design, batch correction, statistics, and how to extract biological meaning from the results using tools geneset analyses and pathways.

• Gene Expression Analysis with Affymetrix (cancer dataset)
• Good experimental design practices
• Import CEL files/normalization options
• Describing sample groups
• Batch correction
• Detecting differentially expressed genes/creating a gene list
• Hierarchical Clustering and other visualizations
• GO Analysis
• Pathway Enrichment
• GeneSet analysis (including Pathway ANOVA)
• Integration with microRNA 

Course Materials:

• Partek Shoe Example
• Analysis of GSE20437
• GSE20437 Publication