About this Class

This is a repeat class for those who couldn't make it into the class on October 9th
 
Learn the basics of microarray gene expression analysis using Partek Genomics Suite and Partek Pathway. As we walk though hands-on analysis of a cancer dataset, you will learn the principles of experimental design, batch correction, statistics, and how to extract biological meaning from the results using tools geneset analyses and pathways.

• Gene Expression Analysis with Affymetrix (cancer dataset)
• Good experimental design practices
• Import CEL files/normalization options
• Describing sample groups
• Batch correction
• Detecting differentially expressed genes/creating a gene list
• Hierarchical Clustering and other visualizations
• GO Analysis
• Pathway Enrichment
• GeneSet analysis (including Pathway ANOVA)
• Integration with microRNA 

Course Materials:

• Partek Shoe Example
• Analysis of GSE20437
• GSE20437 Publication
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