ncibtep@nih.gov

Bioinformatics Training and Education Program

Hands-on: Transcription Factor Binding Site and Promoter Analysis with Genomatix

Hands-on: Transcription Factor Binding Site and Promoter Analysis with Genomatix

 When: Apr. 30th, 2013 9:00 am - 5:00 pm

This class has ended.
Video Archive *Class recordings may take ~48 hours to become available.
To Know
  • Where: 6116 Executive Blvd., Room 4075
  • Organized By: BTEP
  • Files

About this Class

Intended Audience: This day-long training course is intended for users who wish to get an introduction to the central concepts, strategies, and analysis software offered by Genomatix for transcription factor binding site and promoter analysis, and to learn how to apply them most efficiently. 

  1. Introduction to Genomatix
  2. Why genome annotation is important for promoter analysis
    ElDorado, Gene2Promoter, Comparative Genomics
  3. Transcription factor binding sites (TFBS) basics
    MatBase, MatInspector
  4. How to define your own TF binding sites de novo
    MatDefine, CoreSearch
  5. Functional promoter analysis
    FastM, FrameWorker, Modelinspector
  6. Putting TFBS and their regulatory targets into biological context
    GeneRanker, Genomatix Pathway System
  7. Analyzing SNP effects on TF binding sites
    SNPInspector, Variant Analysis
  8. Assorted TFBS tools DiAlign/DiAlignTF, SequenceShaper

Genomatix is  available to all researchers affiliated with the NCI

Files

  • PromoterSeminar.zip: |