Qlucore: Import and Analyze public data from SRA, GEO and TCGA
When: May. 11th, 2022 11:00 am - 12:00 pm
To Know
- Where: Online Webinar
- Organized By: BTEP
- Presented By: Yana Stackpole (Qlucore)
About this Class
Many new studies include RNA sequencing data. In this webinar we will go through the process of downloading and importing SRA data using the SRA toolkit, how to use an aligner to convert fastq files into BAM files and then how to import and normalize the BAM files in Omics Explorer. We will also show how you can download GEO soft files, TCGA mRNA data from GDAC and import 10X Genomics Cellranger data.- Meeting link:
- https://cbiit.webex.com/cbiit/j.php?MTID=m1ab9795e00f76ba4641bf19f662d54a9
- Meeting number:
- 2311 589 3124
- Password:
- VKwJ4MRg4?7
- Host key:
- 372928
- Cohost:
- Alex Emmons; Amy Stonelake; Desiree Tillo; Peter Fitzgerald; Joe Wu; Carl McIntosh
- Join by video system
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Dial 23115893124@cbiit.webex.comYou can also dial 173.243.2.68 and enter your meeting number.
- Join by phone
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1-650-479-3207 Call-in number (US/Canada)Access code: 2311 589 3124Host PIN: 5225