Single Cell Data Analysis in Partek Flow

About this Class

Partek software provides a singular web based point and click environment for analyzing and visualizing high dimensional multi-omics sequencing data, making bioinformatics easily accessible to all researchers.  Partek Flow software is available to NCI researchers.  Join us for this online training session, where the Partek Scientist will show you how to perform start to finish analysis on Single Cell RNA-Seq data with the point-and-click user interface in Partek software.

A human PBMC scRNA-Seq sample data will be used to illustrate basic analysis steps from raw count matrix to cell type classification and differential analysis.

Agenda:

·       Perform QA/QC

·       Normalization

·       Cell type classification

·       Differential analysis

·       Visualization (t-SNE, UMAP, Violin plot, bubble map etc.)