BTEP: Single Cell RNA Seq Analysis Workshop, Part 1
When: Oct. 3rd, 2019 10:00 am - 3:00 pm
This class has ended.
Video Archive
*Class recordings may take ~48 hours to become available.
To Know
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Where: Building 37, Room 4041/4107
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Organized By: BTEP
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Presented By: Yongmei Zhao (CCR-SF IFX Group), Michael Kelly (SCAF), Cihan Oguz (NCBR), Vicky Chen (NCBR), Nathan Wong (CCBR)
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About this Class
Overview of single cell technologies, analysis workflows, scRNA-seq preprocessing and QC
10:00 – 10:30 AM Introduction to single cell technologies and applications (Mike Kelly)
10:30 – 11:00 AM Overview of single cell transcriptomic analysis workflow and pipelines (Yongmei Zhao)
11:05 – 12:00 PM scRNA-seq preprocessing and quality control (Vicky Chen, Nathan Wong)
1:00 – 2:00 PM Clustering analysis, dimensionality reduction, marker gene identification, and visualization (Cihan Oguz)
2:00 - 3:00 PM Single cell RNA-seq cell type classification and annotation (Keyur Talsania)
If unable to join in person, WebEx will be provided.
| Meeting number (access code): 737 705 057 |
| Meeting password: rPMv3Gf@ |
| Thursday, October 3, 2019 |
| 10:00 am | (UTC-05:00) Eastern Time (US & Canada) | 5 hrs |
| Join by phone |
| Tap to call in from a mobile device (attendees only) |
| 1-650-479-3207 Call-in toll number (US/Canada) |
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| Join from a video system or application |
| Dial 737705057@cbiit.webex.com |
| You can also dial 173.243.2.68 and enter your meeting number. |
The link to the WebEx recording of this lecture is here:
https://cbiit.webex.com/webappng/sites/cbiit/recording/play/c307ef564e4246bba1a7316fed14fea3 Files
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2019-10-03-BTEP-Single-Cell-Analysis-Workshop_MK.pdf: |
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Single-BTEP-Workflow-Pipelne-Overview-Slides-YZ.pdf: |
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03_WongN_ChenV_Single-Cell-BTEP-QC-Slides.pdf: |
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Single-Cell-BTEP-CO-Slides.pdf: |
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Celltype_Annotation_final.pdf: |
