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Bioinformatics Training and Education Program

BTEP: Single Cell RNA Seq Analysis Workshop, Part 1

BTEP: Single Cell RNA Seq Analysis Workshop, Part 1

 When: Oct. 3rd, 2019 10:00 am - 3:00 pm

To Know

Where:
Building 37, Room 4041/4107
Organizer:
BTEP
Presented By:
Yongmei Zhao (CCR-SF IFX Group), Michael Kelly (SCAF), Cihan Oguz (NCBR), Vicky Chen (NCBR), Nathan Wong (CCBR)
Class Files:
This class has ended.

About this Class

Overview of single cell technologies, analysis workflows, scRNA-seq preprocessing and QC 10:00 – 10:30 AM Introduction to single cell technologies and applications (Mike Kelly) 10:30 – 11:00 AM Overview of single cell transcriptomic analysis workflow and pipelines (Yongmei Zhao) 11:05 – 12:00 PM scRNA-seq preprocessing and quality control (Vicky Chen, Nathan Wong) 1:00 – 2:00 PM Clustering analysis, dimensionality reduction, marker gene identification, and visualization (Cihan Oguz) 2:00 - 3:00 PM Single cell RNA-seq cell type classification and annotation (Keyur Talsania) If unable to join in person, WebEx will be provided.
Meeting number (access code): 737 705 057
Meeting password: rPMv3Gf@
Thursday, October 3, 2019
10:00 am  |  (UTC-05:00) Eastern Time (US & Canada)  |  5 hrs
Join
Join by phone
Tap to call in from a mobile device (attendees only)
1-650-479-3207 Call-in toll number (US/Canada)
Join from a video system or application
Dial 737705057@cbiit.webex.com
You can also dial 173.243.2.68 and enter your meeting number.
Join using Microsoft Lync or Microsoft Skype for Business
Dial 737705057.cbiit@lync.webex.com
The link to the WebEx recording of this lecture is here: https://cbiit.webex.com/webappng/sites/cbiit/recording/play/c307ef564e4246bba1a7316fed14fea3

Files

  • 2019-10-03-BTEP-Single-Cell-Analysis-Workshop_MK.pdf: |
  • Single-BTEP-Workflow-Pipelne-Overview-Slides-YZ.pdf: |
  • 03_WongN_ChenV_Single-Cell-BTEP-QC-Slides.pdf: |
  • Single-Cell-BTEP-CO-Slides.pdf: |
  • Celltype_Annotation_final.pdf: |