ncibtep@nih.gov

Bioinformatics Training and Education Program

BTEP Class Catalog

Exclusively showcasing BTEP-hosted events and classes.

Learning Level

Topic

Artificial Intelligence (Al)

2025

From Cell Atlases to Medicines with AI

General Audience

Artificial Intelligence (Al)

2024

Custom AI Deployments to Keep Data Conversations (chats) Current

General Audience

Artificial Intelligence (Al)

2024

Rescheduled Event - Bioinformatics: AI Chatbots in the Cloud. Plus workflows.

General Audience

Artificial Intelligence (Al)

2024

Leveraging AI for Precision Oncology: From Predicting Therapeutic Response to Enhancing CNS Tumor Diagnosis

General Audience

Artificial Intelligence (Al)

2024

Translational AI Applications in Prostate Cancer

General Audience

Artificial Intelligence (Al)

2024

NIH Research Festival - Bioinformatics Community Fair

General Audience

Artificial Intelligence (Al)

2024

Genomes, Avatars and AI: The Future of Personalized Medicine

General Audience

Artificial Intelligence (Al)

2024

AI to Accelerate Biomedical Research

General Audience

Artificial Intelligence (Al)

2024

Machine Learning for RNA-seq Data vs. Statistical DGE Analysis Utilizing Both for Deeper Insights

General Audience

Artificial Intelligence (Al)

2024

Transforming Medicine with AI: From TrialGPT to GeneAgent

General Audience

Artificial Intelligence (Al)

2024

Introduction to single cell RNA-Seq

General Audience

Artificial Intelligence (Al)

2024

Explainable Artificial Intelligence (XAI) and Single Cell Genomics to Understand the Cellular Complexity of the Human Brain

General Audience

Artificial Intelligence (Al)

2024

How Large Language Models (LLMs) Accelerate Data Discovery and Harmonization

General Audience

Artificial Intelligence (Al)

2024

Artificial Intelligence in the Biomedical Sciences

General Audience

Cancer

2024

Clinical and Computational Molecular Profiling in Pediatric Cancer Diagnostics

General Audience

Cancer

2024

A More Comprehensive Landscape of RNA Alterations in Cancer with Long-read Sequencing

General Audience

Cancer

2024

Analyzing Cancer Data from the CRDC in the Google Cloud with the ISB-CGC Cancer Gateway in the Cloud

General Audience

Computing Resources

2025

Getting Started with HPC OnDemand: A New Interface for NIH HPC Users

General Audience

Computing Resources

2025

B4B Lesson 4: Working on Biowulf

Beginner

Computing Resources

2025

B4B Lesson 1: What is Biowulf?

Beginner

Computing Resources

2024

Introduction to Bioinformatics Resources at NIH

General Audience

Computing Resources

2024

Bioinformatics Resources for NCI CCR Scientists

General Audience

Data

2025

Analyzing Human Tumor Atlas Network (HTAN) Spatial Data with BigQuery Spatial Analytics

General Audience

Data

2025

Documenting Analysis with Jupyter Lab

Beginner

Data

2025

Accessing and Analyzing Human Tumor Atlas Network (HTAN) Data using the Cancer Genomics Cloud

General Audience

Data

2025

Analyzing Human Tumor Atlas Network (HTAN) Data Accessible in BigQuery with CellTypist

Advanced

Data

2024

Accessing and Downloading TCGA Data

General Audience

Data

2024

Engineering Serendipity: Computational Methods for Large-Scale Data Extraction

General Audience

Databases

2025

Pathway Analysis with Reactome

Beginner

Databases

2025

Functional Enrichment with DAVID

Beginner

Databases

2025

The Human Tumor Atlas Network and HTAN Data Portal

General Audience

Databases

2024

GEO Analysis Tools: New and Improved

General Audience

Databases

2024

CellMiner Cross-DataBase (CellMinerCDB) for Exploration and Analyses of Cancer Cell Line Pharmacogenomics Data

General Audience

Databases

2024

Using Google BigQuery and R to Analyze TCGA data from the NCI Genomic and Proteomic Data Commons

Advanced

Databases

2024

An Introduction to DAVID for Functional Enrichment Analysis

General Audience

Microbiome

2024

Streamlining microbial shotgun analysis with JAMS - from fastqs to pdfs

General Audience

Next Gen Sequencing (NGS) Methods

2025

Oxford Nanopore Technologies Long Read Sequencing Live Workshop: Human Variation Data Analysis

General Audience

Next Gen Sequencing (NGS) Methods

2025

Oxford Nanopore Technologies Long Read Sequencing Live Workshop: Single Cell RNA-Seq Analysis

General Audience

Next Gen Sequencing (NGS) Methods

2025

Introduction to Gene Ontology and Pathway Analysis

Beginner

Next Gen Sequencing (NGS) Methods

2025

Spatiotemporal Modeling of Molecular Holograms

Intermediate

Next Gen Sequencing (NGS) Methods

2025

Performing Differential Expression Analysis for Bulk RNA Sequencing

Beginner

Next Gen Sequencing (NGS) Methods

2025

Differential Expression Analysis for Bulk RNA Sequencing: QC

Beginner

Next Gen Sequencing (NGS) Methods

2025

Quantifying Gene Expression from RNA Sequencing Data

General Audience

Next Gen Sequencing (NGS) Methods

2025

Aligning Next Generation Sequencing (NGS) Data to Genome

Beginner

Next Gen Sequencing (NGS) Methods

2025

Cleaning and Preparing Next Generation Sequencing (NGS) Data for Downstream Analysis

Beginner

Next Gen Sequencing (NGS) Methods

2025

Introduction to Next Generation Sequencing (NGS) Data and Quality Control

Beginner

Next Gen Sequencing (NGS) Methods

2025

Introduction to RNA Sequencing

Beginner

Next Gen Sequencing (NGS) Methods

2025

B4B Lesson 5: Downloading data from the SRA

Beginner

Next Gen Sequencing (NGS) Methods

2025

Revealing Tumor-Promoting Signals in Breast Cancer Subtypes: A NIDAP Analysis of Single-Cell Data

General Audience

Next Gen Sequencing (NGS) Methods

2024

Bulk RNA Sequencing Analysis with Qiagen: From FASTQ to Biological Interpretation

General Audience

Next Gen Sequencing (NGS) Methods

2024

Bulk RNA Sequencing Analysis using Partek Flow

General Audience

Next Gen Sequencing (NGS) Methods

2024

Building and Rebuilding the Vertebrate Retina, One Cell at a Time

General Audience

Next Gen Sequencing (NGS) Methods

2024

An Introduction to RNASEQ - Overview of Expression Data Analysis

Beginner

Next Gen Sequencing (NGS) Methods

2024

Telomere-to-telomere (T2T) Genome Assemblies: Shining a Light on Repeat Biology and Chromosome Dynamics

General Audience

Next Gen Sequencing (NGS) Methods

2024

Introduction to scRNA-Seq with R (Seurat)

Beginner

Next Gen Sequencing (NGS) Methods

2024

SCAF: Overview of Cell Ranger output files and single cell data analysis quality control

General Audience

Omics

Upcoming

Predicting Genetic Variants that Alter 3D Genome Folding in Cancer and Developmental Disorders

General Audience

Omics

2025

Functional Screens and Developmental Trajectory Inference with Spatial Transcriptomics

General Audience

Omics

2025

Single-molecule Mapping of Somatic Epimutations in Normal Development and Oncogenesis

General Audience

Omics

2025

Visualizing Genomic Data with the Integrative Genomics Viewer (IGV)

Beginner

Omics

2025

Visualizing Genomic Data: Preparing Files

Beginner

Omics

2024

Spatial Omics Data Analysis with MAWA 4: Neighborhood Analysis using Spatial UMAP

General Audience

Omics

2024

Spatial Omics Data Analysis with MAWA 3: Pairwise Spatial Analysis using Hypothesis Testing

General Audience

Omics

2024

Spatial Omics Data Analysis with MAWA 2: Unsupervised Phenotyping

General Audience

Omics

2024

Spatial Omics Data Analysis with MAWA 1: Introduction to NIDAP, MAWA Basics, and Phenotyping

General Audience

Omics

2024

SPECIAL EVENT: Single-Cell Spatial Transcriptomics + Proteomics!

General Audience

Omics

2024

Multimodal Data Integration: From Biomarkers to Mechanisms

General Audience

Programming

2025

Joining and Transforming Data with dplyr

Beginner

Programming

2025

Decision Trees, Survival Trees, and Random Forest: Practical Examples with R Programming

Intermediate

Programming

2025

Summarizing Data with dplyr

Beginner

Programming

2025

Subsetting Data with dplyr

Beginner

Programming

2025

Introducing Tidyr for Reshaping and Formatting Data

Beginner

Programming

2025

Gene Set Enrichment Analysis with R

Intermediate

Programming

2025

Introduction to Data Wrangling with R

Beginner

Programming

2025

Bioinformatics for Beginners: Unix Review

Beginner

Programming

2025

Clustering with R and RStudio

Intermediate

Programming

2025

B4B Lesson 3: Useful Unix

Beginner

Programming

2025

B4B Lesson 2: Navigating file systems with Unix

Beginner

Programming

2025

Survival Analysis in R Using the survival Package

Intermediate

Programming

2024

Creating and Modifying Scatter Plots Using ggplot2: PCA and Volcano

Beginner

Programming

2024

Unix for the Bioinformatics Beginners

Beginner

Programming

2024

Accelerating Bioinformatics Workflows with Nextflow

General Audience

Programming

2024

Data Visualization and Statistical Integration with ggpubr

Intermediate

Programming

2024

Document Analysis Steps with Jupyter Lab

Beginner

Programming

2024

Unix for the Bioinformatics Beginners

Beginner

Programming

2024

Introduction to R and Python Programming Languages

General Audience

Programming

2024

Data Visualization with ggplot2

Beginner

Programming

2024

Version control with Git

Beginner

Programming

2024

Introduction to Bioconductor and report generation with R

General Audience

Programming

2024

Introduction to Data Visualization with R (Part 2)

General Audience

Programming

2024

Introduction to Data Visualization with R (part 1)

General Audience

Programming

2024

Lesson 6: Introduction to Unix on Biowulf, January 2024

Beginner

Programming

2024

Data Frames and Data Wrangling (part 2)

General Audience

Programming

2024

Lesson 5: Introduction to Unix on Biowulf, January 2024

Beginner

Programming

2024

Data Frames and Data Wrangling (part 1)

General Audience

Programming

2024

Lesson 4: Introduction to Unix on Biowulf, January 2024

Beginner

Programming

2024

R Data Structures: Introducing Data Frames

General Audience

Programming

2024

Lesson 3: Introduction to Unix on Biowulf, January 2024

Beginner

Programming

2024

The Basics of R Programming

General Audience

Programming

2024

Lesson 2: Introduction to Unix on Biowulf, January 2024

Beginner

Programming

2024

Introduction to R and RStudio

General Audience

Programming

2024

Lesson 1: Introduction to Unix on Biowulf, January 2024

Beginner

Software

2024

Pathway Analysis using Qiagen IPA

General Audience

Software

2024

Finding Correlation between Gene and Protein Expression Data with Qlucore using Regression

General Audience

Software

2024

Variant Analysis with Qiagen CLC Genomics Workbench

General Audience

Software

2024

Getting Started with Partek Flow at NIH

Beginner

Software

2024

Qiagen CLC Genomics Workbench: De Novo Assembly Using Long Reads and Short Read Polishing

Beginner

Software

2024

Proteomics Data Analysis in Qlucore : from Mass Spectrometry Output to Statistical Analysis, Visualization to Biological Interpretation in GSEA

Beginner

Software

2024

Analyzing ChIP sequencing data using Qiagen's CLC Genomics Workbench

General Audience

Software

2024

The CCBR Single-cell RNA-seq Workflow on NIDAP

General Audience

Software

2024

Differential Expression Analysis with Seurat

General Audience

Software

2024

Qiagen CLC Genomics Workbench: bulk RNA sequencing

General Audience

Software

2024

Visual and fast bulk RNAseq analysis for biologists using Qlucore Omics Explorer

General Audience

Software

2024

Getting Started with Seurat: QC to Clustering

Beginner

Software

2024

Introduction to Geneious Prime

General Audience

Software

2024

Single cell RNA sequencing analysis with Partek Flow: in-person training

General Audience

Software

2024

Introduction to Pathway Analysis using the Reactome Pathway Knowledgebase

General Audience

Software

2024

Documenting Your Analysis with Quarto

General Audience

Statistics

2025

Decision Trees, Survival Trees, and Random Forest: Practical Examples with R Programming

Intermediate

Statistics

2024

Statistical Analysis of Biomarker Data in Clinical Trials

General Audience

Statistics

2024

Statistical Methods for Single-Cell RNA-Seq Analysis and Spatial Transcriptomics

General Audience

Technology

2024

Pixels to Prognosis: Next-Gen Digital Pathology for Cancer and Reproductive Aging Research

General Audience

Technology

2024

Fundamentals of Mass Spectrometry Based Proteomics and Applications for Quantitation

General Audience

Technology

2024

The CCR Single Cell Analysis Facility (SCAF): An Overview

General Audience